3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14440

Details:

PFam ID : PF14440

PFam Domain Description : Xanthomonas XOO_2897-like deaminase

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 27

Average sequence length: 114.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14440	A3NNM1_BURP6_1412_1534	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14440	B5I6T4_9ACTO_109_258	100

Sequence based PCA Plot of the family - PF14440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay