3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14437

Details:

PFam ID : PF14437

PFam Domain Description : MafB19-like deaminase

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 23

Average sequence length: 134.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14437	A3X942_9RHOB_1_83	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14437	B2STD6_XANOP_1442_1577	100

Sequence based PCA Plot of the family - PF14437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay