3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14436

Details:

PFam ID : PF14436

PFam Domain Description : Bacterial EndoU nuclease

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 139

Average sequence length: 116.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14436	Q1VTG6_9FLAO_38_159	75.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14436	Q0REB1_FRAAA_1_101	91.3

Sequence based PCA Plot of the family - PF14436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay