3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14429

Details:

PFam ID : PF14429

PFam Domain Description : C2 domain in Dock180 and Zizimin proteins

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 131

Average sequence length: 180.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14429	E3NK99_CAERE_429_542	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14429	E5SF69_TRISP_627_842	100

Sequence based PCA Plot of the family - PF14429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=27 Length=8
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay