3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14424

Details:

PFam ID : PF14424

PFam Domain Description : The BURPS668_1122 family of deaminases

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 52

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14424	A1ZN95_9BACT_581_725	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14424	Q8Z949_SALTI_2_85	100

Sequence based PCA Plot of the family - PF14424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay