3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14418

Details:

PFam ID : PF14418

PFam Domain Description : OST-HTH Associated domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 50

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14418	Q4U9I2_THEAN_471_548	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14418	C5LI01_9ALVE_107_184	97.9

Sequence based PCA Plot of the family - PF14418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay