3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14417

Details:

PFam ID : PF14417

PFam Domain Description : MEDS: MEthanogen/methylotroph, DcmR Sensory domain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 164

Average sequence length: 173.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14417	E3DNZ4_HALPG_4_190	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14417	A9G0Q3_SORC5_2_192	100

Sequence based PCA Plot of the family - PF14417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay