3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14414

Details:

PFam ID : PF14414

PFam Domain Description : A nuclease of the HNH/ENDO VII superfamily with conserved WHH

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 98

Average sequence length: 43.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14414	B4VA62_9ACTO_93_131	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14414	C2LTB5_STRSL_147_189	95.8

Sequence based PCA Plot of the family - PF14414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay