3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14413

Details:

PFam ID : PF14413

PFam Domain Description : Thg1 C terminal domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 231

Average sequence length: 122.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14413	YR259_MIMIV_166_272	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14413	D2RF83_ARCPA_123_245	100

Sequence based PCA Plot of the family - PF14413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=20
Motif2 Start=61 Length=8
Motif3 Start=219 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay