3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14412

Details:

PFam ID : PF14412

PFam Domain Description : A nuclease family of the HNH/ENDO VII superfamily with conserved AHH

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 169

Average sequence length: 106.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14412	D0BQG1_9FUSO_310_426	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14412	D0BQG1_9FUSO_310_426	91.6

Sequence based PCA Plot of the family - PF14412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay