3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14410

Details:

PFam ID : PF14410

PFam Domain Description : HNH/ENDO VII superfamily nuclease with conserved GHE residues

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 59

Average sequence length: 68.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14410	D0KFB7_PECWW_1_49	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14410	C2RQE1_BACCE_43_125	94.8

Sequence based PCA Plot of the family - PF14410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay