3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14403

Details:

PFam ID : PF14403

PFam Domain Description : Circularly permuted ATP-grasp type 2

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 40

Average sequence length: 412.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14403	B7AQN8_9BACE_293_454	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14403	A8MKZ9_ALKOO_3_442	100

Sequence based PCA Plot of the family - PF14403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=248 Length=8
Motif2 Start=126 Length=8
Motif3 Start=357 Length=8
Motif4 Start=319 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay