3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14402

Details:

PFam ID : PF14402

PFam Domain Description : 7 transmembrane helices usually fused to an inactive transglutaminase

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 80

Average sequence length: 307.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14402	Q2RQN4_RHORT_23_180	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14402	B0SCJ9_LEPBA_205_528	100

Sequence based PCA Plot of the family - PF14402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=11
Motif2 Start=45 Length=8
Motif3 Start=305 Length=14
Motif4 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay