3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14400

Details:

PFam ID : PF14400

PFam Domain Description : Inactive transglutaminase fused to 7 transmembrane helices

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 89

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14400	Q6AKR8_DESPS_24_185	88

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14400	C6BZZ3_DESAD_23_203	100

Sequence based PCA Plot of the family - PF14400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=162 Length=8
Motif2 Start=61 Length=8
Motif3 Start=19 Length=11
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay