3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14399

Details:

PFam ID : PF14399

PFam Domain Description : A predicted NlpC/p60-like peptidase

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 204

Average sequence length: 306.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14399	E1KD23_9FIRM_3_151	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14399	B1KQQ8_SHEWM_1_338	100

Sequence based PCA Plot of the family - PF14399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=263 Length=8
Motif3 Start=110 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay