3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14398

Details:

PFam ID : PF14398

PFam Domain Description : YheC/D like ATP-grasp

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 229

Average sequence length: 255

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14398	B0TET0_HELMI_649_919	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14398	B0TET0_HELMI_649_919	100

Sequence based PCA Plot of the family - PF14398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=17
Motif2 Start=138 Length=11
Motif3 Start=220 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay