3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14393

Details:

PFam ID : PF14393

PFam Domain Description : Domain of unknown function (DUF4422)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 177

Average sequence length: 223.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14393	D3P8C2_AZOS1_4_264	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14393	F2X7A9_CAMJE_13_287	100

Sequence based PCA Plot of the family - PF14393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=199 Length=8
Motif3 Start=49 Length=17
Motif4 Start=209 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay