3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14390

Details:

PFam ID : PF14390

PFam Domain Description : Domain of unknown function (DUF4420)

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 97

Average sequence length: 292.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14390	A1R3Y7_ARTAT_3_262	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14390	A8FAS9_BACP2_2_322	100

Sequence based PCA Plot of the family - PF14390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=163 Length=11
Motif3 Start=179 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay