3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14389

Details:

PFam ID : PF14389

PFam Domain Description : Leucine-zipper of ternary complex factor MIP1

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 134

Average sequence length: 81.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14389	A9RCB5_PHYPA_162_209	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14389	A9RFR4_PHYPA_180_239	100

Sequence based PCA Plot of the family - PF14389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=65 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay