3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14388

Details:

PFam ID : PF14388

PFam Domain Description : Domain of unknown function (DUF4419)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 117

Average sequence length: 266.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14388	D1ZYW9_SORMK_65_108	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14388	E9FBC3_METAR_57_389	100

Sequence based PCA Plot of the family - PF14388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=96 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay