3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14382

Details:

PFam ID : PF14382

PFam Domain Description : Exosome complex exonuclease RRP4 N-terminal region

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 259

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14382	A2DKL3_TRIVA_7_46	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14382	A0CIG6_PARTE_14_52	100

Sequence based PCA Plot of the family - PF14382 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=21
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay