3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14381

Details:

PFam ID : PF14381

PFam Domain Description : Ethylene-responsive protein kinase Le-CTR1

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 150

Average sequence length: 173.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14381	D2UXM1_NAEGR_134_362	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14381	Q00XP4_OSTTA_68_273	100

Sequence based PCA Plot of the family - PF14381 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=122 Length=8
Motif3 Start=109 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay