3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14380

Details:

PFam ID : PF14380

PFam Domain Description : Wall-associated receptor kinase C-terminal

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 196

Average sequence length: 91.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14380	A3AQ91_ORYSJ_2_59	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14380	C5XGW2_SORBI_165_281	100

Sequence based PCA Plot of the family - PF14380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=8
Motif3 Start=32 Length=14
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay