3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14377

Details:

PFam ID : PF14377

PFam Domain Description : Domain of unknown function (DUF4414)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 157

Average sequence length: 101.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14377	C1E8F9_MICSR_2951_3111	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14377	Q7Q6B2_ANOGA_793_915	100

Sequence based PCA Plot of the family - PF14377 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay