3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14376

Details:

PFam ID : PF14376

PFam Domain Description : Haem-binding domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 153

Average sequence length: 129.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14376	B3JFE6_9BACE_1_43	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14376	A6AUV6_VIBHA_9_150	100

Sequence based PCA Plot of the family - PF14376 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay