3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14372

Details:

PFam ID : PF14372

PFam Domain Description : Domain of unknown function (DUF4413)

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 221

Average sequence length: 95.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14372	E3K8K9_PUCGT_253_354	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14372	C5YU48_SORBI_9_137	100

Sequence based PCA Plot of the family - PF14372 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=41 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay