3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14365

Details:

PFam ID : PF14365

PFam Domain Description : Domain of unknown function (DUF4409)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 233

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14365	B9I4C1_POPTR_12_89	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14365	B7ZWS3_MAIZE_133_279	100

Sequence based PCA Plot of the family - PF14365 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=8
Motif2 Start=8 Length=18
Motif3 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay