3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14362

Details:

PFam ID : PF14362

PFam Domain Description : Domain of unknown function (DUF4407)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 108

Average sequence length: 297.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14362	D3M8B7_9ACTO_11_316	18.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14362	D3D985_9ACTO_68_374	100

Sequence based PCA Plot of the family - PF14362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay