3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14359

Details:

PFam ID : PF14359

PFam Domain Description : Domain of unknown function (DUF4406)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 98

Average sequence length: 89.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14359	A3YKZ5_CAMJE_30_108	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14359	C4NTG2_9CAUD_10_115	100

Sequence based PCA Plot of the family - PF14359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=18
Motif3 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay