3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14355

Details:

PFam ID : PF14355

PFam Domain Description : Abortive infection C-terminus

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 138

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14355	D6T212_GARVA_48_107	67.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14355	C0XNK4_9CORY_19_97	100

Sequence based PCA Plot of the family - PF14355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay