3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14353

Details:

PFam ID : PF14353

PFam Domain Description : CpXC protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 86

Average sequence length: 120.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14353	E7NQD5_TREPH_2_132	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14353	A9AYA0_HERA2_9_146	100

Sequence based PCA Plot of the family - PF14353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay