3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14350

Details:

PFam ID : PF14350

PFam Domain Description : Beta protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 71

Average sequence length: 304.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14350	D4MGE6_9ENTE_4_354	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14350	C8UNK8_ECO1A_5_359	100

Sequence based PCA Plot of the family - PF14350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=216 Length=8
Motif2 Start=302 Length=8
Motif3 Start=1 Length=11
Motif4 Start=235 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay