3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14349

Details:

PFam ID : PF14349

PFam Domain Description : Motility related/secretion protein

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 221

Average sequence length: 423.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14349	D0MDZ3_RHOM4_1151_1717	54.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14349	D2QUU6_SPILD_194_607	34

Sequence based PCA Plot of the family - PF14349 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay