3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14345

Details:

PFam ID : PF14345

PFam Domain Description : GDYXXLXY protein

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 156

Average sequence length: 152.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14345	F0EV56_HAEPA_700_786	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14345	B4VKN0_9CYAN_3_187	100

Sequence based PCA Plot of the family - PF14345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=148 Length=8
Motif3 Start=31 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay