3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14342

Details:

PFam ID : PF14342

PFam Domain Description : Domain of unknown function (DUF4396)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 124

Average sequence length: 134.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14342	D2V4F1_NAEGR_41_193	35.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14342	D2V4F1_NAEGR_41_193	100

Sequence based PCA Plot of the family - PF14342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay