3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14338

Details:

PFam ID : PF14338

PFam Domain Description : Mrr N-terminal domain

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 249

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14338	E8SC98_MICSL_9_65	58.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14338	D4YVW9_9LACO_16_114	100

Sequence based PCA Plot of the family - PF14338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=79 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay