3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14336

Details:

PFam ID : PF14336

PFam Domain Description : Domain of unknown function (DUF4392)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 81

Average sequence length: 275.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14336	D2VFN9_NAEGR_8_332	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14336	D2VFN9_NAEGR_8_332	100

Sequence based PCA Plot of the family - PF14336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=44 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay