3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14332

Details:

PFam ID : PF14332

PFam Domain Description : Domain of unknown function (DUF4388)

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 327

Average sequence length: 130.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14332	B1XLS8_SYNP2_2_184	53.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14332	A5G3K6_GEOUR_15_109	100

Sequence based PCA Plot of the family - PF14332 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=8
Motif2 Start=19 Length=8
Motif3 Start=35 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay