3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14331

Details:

PFam ID : PF14331

PFam Domain Description : ImcF-related N-terminal domain

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 334

Average sequence length: 257.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14331	A1SQX7_PSYIN_173_388	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14331	Q02CI0_SOLUE_132_426	100

Sequence based PCA Plot of the family - PF14331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=21 Length=8
Motif3 Start=66 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay