3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14328

Details:

PFam ID : PF14328

PFam Domain Description : Domain of unknown function (DUF4385)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 67

Average sequence length: 139.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14328	A8EZ96_RICCK_10_114	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14328	A7F8C4_SCLS1_1_72	95.4

Sequence based PCA Plot of the family - PF14328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=18
Motif2 Start=2 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay