3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14327

Details:

PFam ID : PF14327

PFam Domain Description : Hinge domain of cleavage stimulation factor subunit 2

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 144

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14327	Q0C8W7_ASPTN_1_44	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14327	Q6E6D6_ANTLO_82_167	100

Sequence based PCA Plot of the family - PF14327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay