3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14323

Details:

PFam ID : PF14323

PFam Domain Description : GxGYxY sequence motif in domain of unknown function

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 61

Average sequence length: 350.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14323	B5JCZ3_9BACT_50_526	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14323	E9C5C6_9EUKA_89_573	100

Sequence based PCA Plot of the family - PF14323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=17
Motif2 Start=263 Length=8
Motif3 Start=324 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay