3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14319

Details:

PFam ID : PF14319

PFam Domain Description : Transposase zinc-binding domain

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 198

Average sequence length: 98.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14319	C7T592_PSEPU_26_115	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14319	B7JCI6_ECOLX_24_92	100

Sequence based PCA Plot of the family - PF14319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=87 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay