3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14318

Details:

PFam ID : PF14318

PFam Domain Description : Mononegavirales mRNA-capping region V

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 109

Average sequence length: 235.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14318	C4NFL5_9MONO_1037_1268	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14318	D5L205_9RHAB_1081_1311	100

Sequence based PCA Plot of the family - PF14318 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=142 Length=8
Motif2 Start=216 Length=17
Motif3 Start=22 Length=11
Motif4 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay