3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14316

Details:

PFam ID : PF14316

PFam Domain Description : Domain of unknown function (DUF4381)

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 192

Average sequence length: 142.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14316	Q4KCT0_PSEF5_120_188	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14316	B8CM89_SHEPW_24_203	99.4

Sequence based PCA Plot of the family - PF14316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay