3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14312

Details:

PFam ID : PF14312

PFam Domain Description : N-formylglutamate amidohydrolase

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 767

Average sequence length: 50.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14312	C9QGU2_VIBOR_234_286	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14312	D0MSL4_PHYIT_2493_2543	100

Sequence based PCA Plot of the family - PF14312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=21
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay