3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14310

Details:

PFam ID : PF14310

PFam Domain Description : Fibronectin type III-like domain

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 1955

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14310	D8U2A9_VOLCA_4616_4764	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14310	C6CXU4_PAESJ_738_828	100

Sequence based PCA Plot of the family - PF14310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=83 Length=8
Motif2 Start=18 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay