3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14309

Details:

PFam ID : PF14309

PFam Domain Description : Domain of unknown function (DUF4378)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 205

Average sequence length: 156.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14309	D8U2A9_VOLCA_4616_4764	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14309	Q0DMA9_ORYSJ_427_579	100

Sequence based PCA Plot of the family - PF14309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=158 Length=11
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay