3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14308

Details:

PFam ID : PF14308

PFam Domain Description : X-domain of DnaJ-containing

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 201

Average sequence length: 187.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14308	F2QQW1_PICPA_169_464	67.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14308	Q8IAQ5_PLAF7_376_648	100

Sequence based PCA Plot of the family - PF14308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=185 Length=8
Motif3 Start=170 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay