3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14307

Details:

PFam ID : PF14307

PFam Domain Description : Glycosyltransferase WbsX

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 191

Average sequence length: 318.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14307	A3XR76_LEEBM_33_352	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14307	Q4K1B0_STRPN_7_373	100

Sequence based PCA Plot of the family - PF14307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=295 Length=8
Motif2 Start=29 Length=11
Motif3 Start=4 Length=8
Motif4 Start=285 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay